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ptgr2 prostaglandin reductase 2 [ Salmo salar (Atlantic salmon) ]

Gene ID: 100195778, updated on 18-Sep-2024

Summary

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Gene symbol
ptgr2
Gene description
prostaglandin reductase 2
See related
Ensembl:ENSSSAG00000076564
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
zadh1
Orthologs
human zebrafish all
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Genomic context

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See ptgr2 in Genome Data Viewer
Location:
chromosome: ssa01
Exon count:
11
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa01 NC_059442.1 (42497732..42507331, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa01 NC_027300.1 (39545564..39555129, complement)

Chromosome ssa01 - NC_059442.1Genomic Context describing neighboring genes Neighboring gene codanin 1 Neighboring gene tau-tubulin kinase 2 Neighboring gene transmembrane protein 62 Neighboring gene mitotic deacetylase associated SANT domain protein b Neighboring gene cysteine-rich protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 15-oxoprostaglandin 13-oxidase [NAD(P)+] activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in prostaglandin metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prostaglandin reductase 2
Names
Zinc-binding alcohol dehydrogenase domain-containing protein 1
NP_001134279.1
XP_014049530.1
XP_045572775.1
XP_045572812.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001140807.1 → NP_001134279.1  prostaglandin reductase 2

    See identical proteins and their annotated locations for NP_001134279.1

    Status: PROVISIONAL

    Source sequence(s)
    BT047099
    UniProtKB/TrEMBL
    B5X7T0
    Related
    ENSSSAP00000106260.2, ENSSSAT00000140986.2
    Conserved Domains (2) summary
    cd08293
    Location:4 → 346
    PTGR2; Prostaglandin reductase
    COG2130
    Location:4 → 348
    CurA; NADPH-dependent curcumin reductase CurA [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only]

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059442.1 Reference Ssal_v3.1

    Range
    42497732..42507331 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014194055.2 → XP_014049530.1  prostaglandin reductase 2 isoform X1

    UniProtKB/TrEMBL
    A0A1S3RAZ8
    Related
    ENSSSAP00000106270.2, ENSSSAT00000140996.2
    Conserved Domains (2) summary
    cd08293
    Location:3 → 335
    PTGR2; Prostaglandin reductase
    COG2130
    Location:7 → 337
    CurA; NADPH-dependent curcumin reductase CurA [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only]

  2. XM_045716819.1 → XP_045572775.1  prostaglandin reductase 2 isoform X2

    Related
    ENSSSAP00000106280.1, ENSSSAT00000141011.2

  3. XM_045716856.1 → XP_045572812.1  prostaglandin reductase 2 isoform X3

RNA

  1. XR_006769593.1 RNA Sequence

    Related
    ENSSSAT00000173342.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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