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LOC100195434 mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase [ Salmo salar (Atlantic salmon) ]

Gene ID: 100195434, updated on 30-Nov-2023

Summary

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Gene symbol
LOC100195434
Gene description
mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
See related
Ensembl:ENSSSAG00000042517
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
mgat2
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Genomic context

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Location:
chromosome: ssa06
Exon count:
3
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa06 NC_059447.1 (77104731..77109971)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa06 NC_027305.1 (72014976..72020207)

Chromosome ssa06 - NC_059447.1Genomic Context describing neighboring genes Neighboring gene MAM domain-containing glycosylphosphatidylinositol anchor protein 2 Neighboring gene uncharacterized LOC123743493 Neighboring gene uncharacterized LOC123743492 Neighboring gene 40S ribosomal protein S29 Neighboring gene uncharacterized LOC106608139

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in oligosaccharide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi stack IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase
NP_001133935.1
XP_014061288.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001140463.1 → NP_001133935.1  alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase

    See identical proteins and their annotated locations for NP_001133935.1

    Status: PROVISIONAL

    Source sequence(s)
    BT045907
    UniProtKB/TrEMBL
    B5X4D8
    Conserved Domains (2) summary
    pfam05060
    Location:106 → 458
    MGAT2; N-acetylglucosaminyltransferase II (MGAT2)
    pfam16031
    Location:52 → 98
    TonB_N; TonB N-terminal region

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059447.1 Reference Ssal_v3.1

    Range
    77104731..77109971
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014205813.2 → XP_014061288.1  alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A1S3SAA9
    Related
    ENSSSAP00000036223.2, ENSSSAT00000061924.2
    Conserved Domains (2) summary
    pfam05060
    Location:116 → 468
    MGAT2; N-acetylglucosaminyltransferase II (MGAT2)
    pfam16031
    Location:62 → 108
    TonB_N; TonB N-terminal region
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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