gfi1b Zinc finger protein Gfi-1b [Salmo salar (Atlantic salmon)] - Gene

Summary

Gene symbol: gfi1b
Gene description: Zinc finger protein Gfi-1b
See related: Ensembl:ENSSSAG00000066672
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Salmo salar
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

Location:: chromosome: ssa03

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
102	current	Ssal_v3.1 (GCF_905237065.1)	ssa03	NC_059444.1 (68090620..68095481, complement)
100	previous assembly	ICSASG_v2 (GCF_000233375.1)	ssa03	NC_027302.1 (68546754..68564864, complement)

Chromosome ssa03 - NC_059444.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IEA Inferred from Electronic Annotation more info	PubMed
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: Zinc finger protein Gfi-1b; zinc finger protein Gfi-1b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001140127.1 → NP_001133599.1 Zinc finger protein Gfi-1b

See identical proteins and their annotated locations for NP_001133599.1

Status: PROVISIONAL

Source sequence(s)

BT045285

UniProtKB/TrEMBL

B5X2L6

Conserved Domains (2) summary

sd00017
Location:154 → 179

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam00096
Location:211 → 233

zf-C2H2; Zinc finger, C2H2 type

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

NC_059444.1 Reference Ssal_v3.1

Range

68090620..68095481 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_014193405.2 → XP_014048880.1 zinc finger protein Gfi-1b isoform X1

UniProtKB/TrEMBL

A0A1S3R949

Related

ENSSSAP00000079202.2, ENSSSAT00000112803.2

Conserved Domains (3) summary

sd00017
Location:213 → 233

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam00096
Location:211 → 233

zf-C2H2; Zinc finger, C2H2 type

pfam13465
Location:253 → 278

zf-H2C2_2; Zinc-finger double domain