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zgc:195282 zgc:195282 [ Danio rerio (zebrafish) ]

Gene ID: 100192223, updated on 28-Oct-2024

Summary

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Official Symbol
zgc:195282provided by ZNC
Official Full Name
zgc:195282provided by ZNC
Primary source
ZFIN:ZDB-GENE-081022-208
See related
Ensembl:ENSDARG00000079488 AllianceGenome:ZFIN:ZDB-GENE-081022-208
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:195285
Summary
Predicted to enable zinc ion binding activity. Predicted to be involved in intrinsic apoptotic signaling pathway in response to DNA damage and regulation of gene expression. [provided by Alliance of Genome Resources, Oct 2024]
Orthologs
all
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Genomic context

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See zgc:195282 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (18841038..18860679, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (18147842..18167797, complement)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 25 member 51a Neighboring gene uncharacterized LOC100535985 Neighboring gene ring finger protein 38 Neighboring gene uncharacterized LOC101886347

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC195285

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in intrinsic apoptotic signaling pathway in response to DNA damage IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in regulation of gene expression IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC100192223
Names
cysteine-rich protein 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001161335.2 → NP_001154807.1  uncharacterized protein LOC100192223 isoform 2

    See identical proteins and their annotated locations for NP_001154807.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice site in the terminal exon compare variant 1. The encoded isoform (2) is shorter than isoform 1.
    Source sequence(s)
    BC163855, CR933519
    UniProtKB/TrEMBL
    B3DKH9, B3DKI2, F6PBC4
    Related
    ENSDARP00000104380.3, ENSDART00000109294.4
    Conserved Domains (1) summary
    cd09401
    Location:5 → 57
    LIM_TLP_like; The LIM domains of thymus LIM protein (TLP)

  2. NM_001305559.2 → NP_001292488.1  uncharacterized protein LOC100192223 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1).
    Source sequence(s)
    CR933519
    UniProtKB/TrEMBL
    A0A8M1P6V7, B8JJ38
    Related
    ENSDARP00000122539.1, ENSDART00000146410.3
    Conserved Domains (1) summary
    cd09401
    Location:5 → 57
    LIM_TLP_like; The LIM domains of thymus LIM protein (TLP)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    18841038..18860679 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009307111.4 → XP_009305386.1  uncharacterized protein LOC100192223 isoform X2

    UniProtKB/TrEMBL
    A0A8M3B517
    Conserved Domains (1) summary
    cd09401
    Location:42 → 84
    LIM_TLP_like; The LIM domains of thymus LIM protein (TLP)

  2. XM_005168323.5 → XP_005168380.1  uncharacterized protein LOC100192223 isoform X1

    UniProtKB/TrEMBL
    A0A8M2BG84
    Conserved Domains (1) summary
    cd09401
    Location:42 → 84
    LIM_TLP_like; The LIM domains of thymus LIM protein (TLP)
Nucleotide Protein Strain
Heading Accession and Version

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