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LOC100191620 uncharacterized LOC100191620 [ Zea mays ]

Gene ID: 100191620, updated on 14-Dec-2023

Summary

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Gene symbol
LOC100191620
Gene description
uncharacterized LOC100191620
Locus tag
ZEAMMB73_Zm00001d049226
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
GRMZM2G141456
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Genomic context

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See LOC100191620 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 4 NC_050099.1 (22152211..22154430, complement)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 4 NC_024462.2 (21693443..21695361, complement)

Chromosome 4 - NC_050099.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100276375 Neighboring gene uncharacterized LOC100274561 Neighboring gene uncharacterized LOC100278953 Neighboring gene uncharacterized LOC100277676

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
  2. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
  3. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • AC211652.4_FG003

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chitin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Nod factor hydrolase protein 1; uncharacterized protein LOC100191620
Names
Glycosyl hydrolase family protein with chitinase insertion domain
chitinase-3-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001137049.1 → NP_001130521.1  Nod factor hydrolase protein 1 precursor

    See identical proteins and their annotated locations for NP_001130521.1

    Status: PROVISIONAL

    Source sequence(s)
    BT033762
    UniProtKB/TrEMBL
    A0A3L6F2H0, B4F9H4
    Conserved Domains (1) summary
    cl10447
    Location:40 → 393
    GH18_chitinase-like; The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have ...

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050099.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    22152211..22154430 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035966610.1 → XP_035822503.1  uncharacterized protein LOC100191620 isoform X1

    UniProtKB/TrEMBL
    A0A804NLQ4
    Conserved Domains (1) summary
    cl10447
    Location:40 → 393
    GH18_chitinase-like; The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have ...

  2. XM_008682752.4 → XP_008680974.1  uncharacterized protein LOC100191620 isoform X2

    See identical proteins and their annotated locations for XP_008680974.1

    UniProtKB/TrEMBL
    A0A804NLQ4
    Conserved Domains (2) summary
    smart00636
    Location:43 → 388
    Glyco_18; Glyco_18 domain
    cl10447
    Location:40 → 393
    GH18_chitinase-like; The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have ...
Nucleotide Protein
Heading Accession and Version

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