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LOC100191316 Mitochondrial arginine transporter BAC1 [ Zea mays ]

Gene ID: 100191316, updated on 14-Dec-2023

Summary

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Gene symbol
LOC100191316
Gene description
Mitochondrial arginine transporter BAC1
Locus tag
ZEAMMB73_Zm00001d032430
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
GRMZM2G078154
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Genomic context

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See LOC100191316 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 1 NC_050096.1 (228065495..228079851, complement)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 1 NC_024459.2 (226164304..226177338, complement)

Chromosome 1 - NC_050096.1Genomic Context describing neighboring genes Neighboring gene NADPH--cytochrome P450 reductase-like Neighboring gene protein NSP-INTERACTING KINASE 3-like Neighboring gene Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family Neighboring gene geraniol 8-hydroxylase-like Neighboring gene uncharacterized LOC100192470

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
  2. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ornithine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial L-ornithine transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Mitochondrial arginine transporter BAC1-like; uncharacterized protein LOC100191316

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001136750.1 → NP_001130222.1  Mitochondrial arginine transporter BAC1-like isoform 1

    See identical proteins and their annotated locations for NP_001130222.1

    Status: PROVISIONAL

    Description
    Transcript Variant: This variant (1) has the longer third exon.
    Source sequence(s)
    BT033373
    UniProtKB/TrEMBL
    A0A804LXE1, B4F8D5
    Conserved Domains (2) summary
    pfam00153
    Location:7 → 99
    Mito_carr; Mitochondrial carrier protein
    cl28162
    Location:220 → 280
    Mito_carr; Mitochondrial carrier protein

  2. NM_001279970.1 → NP_001266899.1  Mitochondrial arginine transporter BAC1-like isoform 2

    See identical proteins and their annotated locations for NP_001266899.1

    Status: PROVISIONAL

    Description
    Transcript Variant: This variant (2) has the shorter third exon.
    Source sequence(s)
    BT088262
    UniProtKB/TrEMBL
    C4JBR5
    Conserved Domains (1) summary
    pfam00153
    Location:42 → 129
    Mito_carr; Mitochondrial carrier protein

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050096.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    228065495..228079851 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008661421.4 → XP_008659643.1  uncharacterized protein LOC100191316 isoform X1

    See identical proteins and their annotated locations for XP_008659643.1

    UniProtKB/TrEMBL
    A0A317YBM5, A0A804LXE3
    Conserved Domains (1) summary
    pfam00153
    Location:91 → 178
    Mito_carr; Mitochondrial carrier protein
Nucleotide Protein
Heading Accession and Version

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