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caskin2.L CASK interacting protein 2 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100191014, updated on 17-Aug-2024

Summary

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Official Symbol
caskin2.L
Official Full Name
CASK interacting protein 2 L homeolog
Primary source
Xenbase:XB-GENE-1008065
Locus tag
XELAEV_18044059mg
See related
EnsemblRapid:ENSXLAG00005033808
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
anks5b; caskin2; caskin2.S
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Genomic context

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See caskin2.L in Genome Data Viewer
Location:
chromosome: 9_10L
Exon count:
21
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10L NC_054387.1 (46999471..47044735, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10L NC_030740.1 (36678095..36724638, complement)

Chromosome 9_10L - NC_054387.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121398298 Neighboring gene growth factor receptor bound protein 2 L homeolog Neighboring gene uncharacterized LOC121398319 Neighboring gene transmembrane protein 94 L homeolog Neighboring gene tRNA splicing endonuclease subunit 54 L homeolog Neighboring gene LLGL2, scribble cell polarity complex component L homeolog Neighboring gene uncharacterized LOC121398305

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC98998

General protein information

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Preferred Names
CASK interacting protein 2 L homeolog
Names
CASK interacting protein 2 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001136167.1 → NP_001129639.1  CASK interacting protein 2 L homeolog

    See identical proteins and their annotated locations for NP_001129639.1

    Status: PROVISIONAL

    Source sequence(s)
    BC092148
    UniProtKB/TrEMBL
    A0A974BY19, Q56A66
    Related
    ENSXLAP00005101221.1, ENSXLAT00005103195.1
    Conserved Domains (11) summary
    cd09497
    Location:469 → 534
    SAM_caskin1,2_repeat1; SAM domain of caskin protein repeat 1
    cd09498
    Location:535 → 605
    SAM_caskin1,2_repeat2; SAM domain of caskin protein repeat 2
    smart00454
    Location:546 → 602
    SAM; Sterile alpha motif
    cd12063
    Location:284 → 345
    SH3_Caskin2; Src Homology 3 domain of CASK interacting protein 2
    cd00204
    Location:109 → 241
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam05104
    Location:921 → 1051
    Rib_recp_KP_reg; Ribosome receptor lysine/proline rich region
    pfam12796
    Location:152 → 251
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:7 → 63
    Ank_4; Ankyrin repeats (many copies)
    pfam16632
    Location:1167 → 1205
    Caskin-tail; C-terminal region of Caskin
    pfam16907
    Location:747 → 830
    Caskin-Pro-rich; Proline rich region of Caskin proteins
    sd00045
    Location:114 → 145
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    46999471..47044735 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018233951.2 → XP_018089440.1  CASK interacting protein 2 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J0TSD3, A0A974BY19
    Related
    ENSXLAP00005100989.1, ENSXLAT00005102960.1
Nucleotide Protein Strain
Heading Accession and Version

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