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SDC2 syndecan 2 [ Meleagris gallopavo (turkey) ]

Gene ID: 100190902, updated on 8-Mar-2024

Summary

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Gene symbol
SDC2
Gene description
syndecan 2
See related
Ensembl:ENSMGAG00000012122
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Meleagris gallopavo
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Meleagridinae; Meleagris
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See SDC2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
103 current Turkey_5.1 (GCF_000146605.3) 3 NC_015013.2 (71825599..71835359)
Build 1.1 previous assembly Turkey_2.01 (GCF_000146605.1) 3 NC_015013.1 (77629316..77639196)

Chromosome 3 - NC_015013.2Genomic Context describing neighboring genes Neighboring gene mitochondrial transcription termination factor 3 Neighboring gene phosphatidylserine synthase 1 Neighboring gene carboxypeptidase Q Neighboring gene uncharacterized LOC104910409 Neighboring gene metadherin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001303220.1 → NP_001290149.1  syndecan-2 precursor

    See identical proteins and their annotated locations for NP_001290149.1

    Status: PROVISIONAL

    Source sequence(s)
    AY852249
    UniProtKB/TrEMBL
    G1NHQ7, Q5I5K6
    Related
    ENSMGAP00000012730.3, ENSMGAT00000013627.3
    Conserved Domains (1) summary
    pfam01034
    Location:138 → 199
    Syndecan; Syndecan domain

RefSeqs of Annotated Genomes: Meleagris gallopavo Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Turkey_5.1 Primary Assembly

Genomic

  1. NC_015013.2 Reference Turkey_5.1 Primary Assembly

    Range
    71825599..71835359
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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