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b4galt2.S UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100190782, updated on 4-Nov-2024

Summary

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Official Symbol
b4galt2.S
Official Full Name
UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2 S homeolog
Primary source
Xenbase:XB-GENE-6021325
Locus tag
XELAEV_18025223mg
See related
EnsemblRapid:ENSXLAG00005021898 AllianceGenome:Xenbase:XB-GENE-6021325
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
b4galt2; b4gal-t2; beta4gal-t2
Summary
Predicted to enable galactosyltransferase activity and metal ion binding activity. Predicted to act upstream of or within carbohydrate metabolic process and protein glycosylation. Predicted to be located in Golgi cisterna membrane and Golgi membrane. Orthologous to human B4GALT2 (beta-1,4-galactosyltransferase 2). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See b4galt2.S in Genome Data Viewer
Location:
chromosome: 4S
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4S NC_054378.1 (72214508..72275302, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4S NC_030731.1 (65990687..66051589, complement)

Chromosome 4S - NC_054378.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 6 member 9 S homeolog Neighboring gene von Willebrand factor C domain-containing protein 2-like, gene 2 S homeolog Neighboring gene ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b S homeolog Neighboring gene microtubule associated serine/threonine kinase 2 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within glycosylation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein glycosylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001135234.1 → NP_001128706.1  UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2 S homeolog

    See identical proteins and their annotated locations for NP_001128706.1

    Status: PROVISIONAL

    Source sequence(s)
    BC168542
    UniProtKB/TrEMBL
    A0A974D0D6, B5DE62
    Related
    ENSXLAP00005064326.1, ENSXLAT00005065840.1
    Conserved Domains (1) summary
    cd00899
    Location:145 → 363
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054378.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    72214508..72275302 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018259299.2 → XP_018114788.1  UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J0UZ55, A0A974D0D6
    Related
    ENSXLAP00005064367.1, ENSXLAT00005065877.1
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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