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PSMC1 proteasome 26S subunit, ATPase 1 [ Taeniopygia guttata (zebra finch) ]

Gene ID: 100190270, updated on 13-Aug-2024

Summary

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Gene symbol
PSMC1
Gene description
proteasome 26S subunit, ATPase 1
See related
Ensembl:ENSTGUG00000012452
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Orthologs
human mouse all
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Genomic context

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See PSMC1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 5 NC_044217.2 (45088844..45096739)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 5 NC_045004.1 (45227942..45235843)

Chromosome 5 - NC_044217.2Genomic Context describing neighboring genes Neighboring gene EF-hand calcium binding domain 11 Neighboring gene tyrosyl-DNA phosphodiesterase 1 Neighboring gene potassium two pore domain channel subfamily K member 13 Neighboring gene NRDE-2, necessary for RNA interference, domain containing Neighboring gene uncharacterized LOC121470127

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A molecular neuroethological approach for identifying and characterizing a cascade of behaviorally regulated genes. Wada K, et al. Proc Natl Acad Sci U S A, 2006 Oct 10. PMID 17018643, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables proteasome-activating activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of proteasome regulatory particle, base subcomplex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
26S proteasome regulatory subunit 4
Names
26S ATPase complex subunit 4-like
putative 26S ATPase complex subunit 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001245312.2 → NP_001232241.1  26S proteasome regulatory subunit 4

    See identical proteins and their annotated locations for NP_001232241.1

    Status: PROVISIONAL

    Source sequence(s)
    DQ214549
    UniProtKB/TrEMBL
    A0A674GCD6, B5FZJ3
    Related
    ENSTGUP00000012822.2, ENSTGUT00000012968.2
    Conserved Domains (1) summary
    PTZ00361
    Location:1 → 440
    PTZ00361; 26 proteosome regulatory subunit 4-like protein; Provisional

RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044217.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    45088844..45096739
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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