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MMADHC metabolism of cobalamin associated D [ Taeniopygia guttata (zebra finch) ]

Gene ID: 100190223, updated on 13-Aug-2024

Summary

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Gene symbol
MMADHC
Gene description
metabolism of cobalamin associated D
See related
Ensembl:ENSTGUG00000011984
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Orthologs
human mouse all
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Genomic context

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See MMADHC in Genome Data Viewer
Location:
chromosome: 7
Exon count:
9
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 7 NC_044219.2 (36201019..36213001, complement)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 7 NC_045006.1 (36373388..36385882, complement)

Chromosome 7 - NC_044219.2Genomic Context describing neighboring genes Neighboring gene LY6/PLAUR domain containing 6B Neighboring gene LY6/PLAUR domain containing 6 Neighboring gene Rho family GTPase 3 Neighboring gene uncharacterized LOC121470284

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A molecular neuroethological approach for identifying and characterizing a cascade of behaviorally regulated genes. Wada K, et al. Proc Natl Acad Sci U S A, 2006 Oct 10. PMID 17018643, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cobalamin metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cobalamin trafficking protein CblD
Names
methylmalonic aciduria and homocystinuria, cblD type

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001245164.1 → NP_001232093.1  cobalamin trafficking protein CblD

    See identical proteins and their annotated locations for NP_001232093.1

    Status: PROVISIONAL

    Source sequence(s)
    DQ214288
    UniProtKB/TrEMBL
    B5FZ30, H0ZP20
    Related
    ENSTGUP00000012349.2, ENSTGUT00000012486.2
    Conserved Domains (1) summary
    pfam10229
    Location:24 → 290
    DUF2246; Uncharacterized conserved protein (DUF2246)

RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044219.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    36201019..36213001 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030276934.3 → XP_030132794.1  cobalamin trafficking protein CblD isoform X1

    UniProtKB/TrEMBL
    A0A674GTR1, H0ZP20
    Related
    ENSTGUP00000025801.1
    Conserved Domains (1) summary
    pfam10229
    Location:24 → 290
    MMADHC; Methylmalonic aciduria and homocystinuria type D protein
Nucleotide Protein
Heading Accession and Version

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