SND1 Staphylococcal nuclease domain-containing protein 1 [Pongo abelii (Sumatran orangutan)] - Gene

Summary

Gene symbol: SND1
Gene description: Staphylococcal nuclease domain-containing protein 1
Locus tag: CR201_G0030415
See related: Ensembl:ENSPPYG00000017972
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Pongo abelii
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Also known as: DKFZP469N2425
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 6

Exon count:: 24

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2)	6	NC_071991.2 (125114270..125548138)
RS_2023_04	previous assembly	NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1)	7	NC_071992.1 (118936821..119370689)

Chromosome 6 - NC_071991.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Markers

WI-15275 (e-PCR)
- UniSTS:57355

G63341 (e-PCR)
- UniSTS:140308

GDB:4585141 (e-PCR)
- UniSTS:4885

NoName (e-PCR)
- UniSTS:485657

STS-T91284 (e-PCR)
- UniSTS:40985

D7S2940 (e-PCR)
- UniSTS:6701

RH120514 (e-PCR)
- UniSTS:133679

GDB:1318687 (e-PCR)
- UniSTS:60720

STS-H23117 (e-PCR)
- UniSTS:9556

SHGC-35064 (e-PCR)
- UniSTS:29801

SHGC-58325 (e-PCR)
- UniSTS:94315

D7S2501 (e-PCR), detects polymorphism
- UniSTS:31344

D7S504 (e-PCR)
- UniSTS:25735

A008Q29 (e-PCR)
- UniSTS:75927

RH47485 (e-PCR)
- UniSTS:39589

G17149 (e-PCR)
- UniSTS:64166

SHGC-152675 (e-PCR)
- UniSTS:177578

G65517 (e-PCR)
- UniSTS:166571

D7S2943 (e-PCR)
- UniSTS:5551

A009A30 (e-PCR)
- UniSTS:1459

D7S2501 (e-PCR), detects polymorphism
- UniSTS:20414

C016YC9 (e-PCR)
- UniSTS:29645

D7S2389 (e-PCR)
- UniSTS:72662

RH122124 (e-PCR)
- UniSTS:134876

D7S2081E (e-PCR)
- UniSTS:15334

D7S2823 (e-PCR)
- UniSTS:3566

GDB:4585650 (e-PCR)
- UniSTS:64242

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables nuclease activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in mRNA catabolic process	IEA Inferred from Electronic Annotation more info	PubMed
involved_in regulatory ncRNA-mediated gene silencing	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of RISC complex	IEA Inferred from Electronic Annotation more info	PubMed
located_in cytosol	IEA Inferred from Electronic Annotation more info	PubMed
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

Go to the top of the page Help

Preferred Names: staphylococcal nuclease domain-containing protein 1

Names: 100 kDa coactivator; p100 co-activator; staphylococcal nuclease and tudor domain containing 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.