U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

krt78.7.L keratin 78, gene 7 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100189561, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
krt78.7.L
Official Full Name
keratin 78, gene 7 L homeolog
Primary source
Xenbase:XB-GENE-876600
Locus tag
XELAEV_18013613mg
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
krt5.4; krt5.4.L
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See krt78.7.L in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (156123682..156128808)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (150215465..150220591)

Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene keratin 78, gene 9 L homeolog Neighboring gene keratin 78, gene 8 L homeolog Neighboring gene keratin 78, gene 6 L homeolog Neighboring gene keratin 78, gene 5 L homeolog

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables structural constituent of skin epidermis IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within intermediate filament organization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within keratinization IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
  
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
  
located_in keratin filament IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
keratin 78, gene 7 L homeolog
Names
keratin 5, gene 4 L homeolog

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001135064.1 → NP_001128536.1  keratin 78, gene 7 L homeolog

    See identical proteins and their annotated locations for NP_001128536.1

    Status: PROVISIONAL

    Source sequence(s)
    BC084109
    UniProtKB/TrEMBL
    A0A974DPR3, Q5XHE8
    Conserved Domains (4) summary
    pfam00038
    Location:185 → 500
    Filament; Intermediate filament protein
    pfam09455
    Location:180 → 323
    Cas_DxTHG; CRISPR-associated (Cas) DxTHG family
    pfam11262
    Location:406 → 478
    Tho2; Transcription factor/nuclear export subunit protein 2
    pfam16208
    Location:47 → 182
    Keratin_2_head; Keratin type II head

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    156123682..156128808
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials