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TRL-CAA7-1 tRNA-Leu (CAA) 7-1 [ Homo sapiens (human) ]

Gene ID: 100189499, updated on 17-Sep-2024

Summary

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Official Symbol
TRL-CAA7-1provided by HGNC
Official Full Name
tRNA-Leu (CAA) 7-1provided by HGNC
Primary source
HGNC:HGNC:35074
See related
AllianceGenome:HGNC:35074
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRNAL44P
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Genomic context

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See TRL-CAA7-1 in Genome Data Viewer
Location:
10p11.21
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (34302488..34302555, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (34330976..34331043, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (34591416..34591483, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:34166034-34167233 Neighboring gene ribosomal protein L23 pseudogene 11 Neighboring gene long intergenic non-protein coding RNA 2629 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:34318619-34319118 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:34331971-34332472 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:34465469-34465970 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:34471859-34472575 Neighboring gene par-3 family cell polarity regulator Neighboring gene Sharpr-MPRA regulatory region 2386 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:34641233-34641969 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3253 Neighboring gene MPRA-validated peak925 silencer Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr10:34715861-34717060 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:34773554-34774054 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:34774055-34774555 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:34777721-34778257 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:34814928-34815683 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:34817074-34817649 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3254 Neighboring gene elongin B pseudogene 4 Neighboring gene Sharpr-MPRA regulatory region 15357 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3255 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2292 Neighboring gene ribosomal protein L37 pseudogene 18

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Chan PP, et al. Nucleic Acids Res, 2009 Jan. PMID 18984615, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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Homology

Other Names

  • transfer RNA leucine 44 (anticodon CAA) pseudogene
  • transfer RNA-Leu (CAA) 7-1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_008557.1 

    Range
    101..168
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    34302488..34302555 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    34330976..34331043 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases
Research Materials