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TRS-AGA5-1 tRNA-Ser (AGA) 5-1 [ Homo sapiens (human) ]

Gene ID: 100189432, updated on 10-Oct-2023

Summary

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Official Symbol
TRS-AGA5-1provided by HGNC
Official Full Name
tRNA-Ser (AGA) 5-1provided by HGNC
Primary source
HGNC:HGNC:35001
See related
AllianceGenome:HGNC:35001
Gene type
tRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRNAS28
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Genomic context

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See TRS-AGA5-1 in Genome Data Viewer
Location:
7q36.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (149608376..149608447)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (150790277..150790348)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (149305467..149305538)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene zinc finger family member 767, pseudogene Neighboring gene tRNA-Cys (anticodon GCA) 23-1 Neighboring gene tRNA-Cys (anticodon GCA) 20-1 Neighboring gene MPRA-validated peak6839 silencer Neighboring gene MPRA-validated peak6840 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26817 Neighboring gene tRNA-Cys (anticodon GCA) 19-1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26818 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18762 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18763 Neighboring gene tRNA-Cys (anticodon GCA) 9-3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Chan PP, et al. Nucleic Acids Res, 2009 Jan. PMID 18984615, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • transfer RNA serine 28 (anticodon AGA)
  • transfer RNA-Ser (AGA) 5-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    149608376..149608447
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    150790277..150790348
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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