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TRC-GCA2-4 tRNA-Cys (anticodon GCA) 2-4 [ Homo sapiens (human) ]

Gene ID: 100189414, updated on 10-Oct-2023

Summary

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Official Symbol
TRC-GCA2-4provided by HGNC
Official Full Name
tRNA-Cys (anticodon GCA) 2-4provided by HGNC
Primary source
HGNC:HGNC:34983
See related
AllianceGenome:HGNC:34983
Gene type
tRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRNAC29; TRC-GCA2-3
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Genomic context

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See TRC-GCA2-4 in Genome Data Viewer
Location:
17q12
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (39154491..39154562, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (40018363..40018434, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (37310744..37310815, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene plexin domain containing 1 Neighboring gene uncharacterized LOC124903995 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12089 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12090 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:37309916-37310422 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:37310423-37310927 Neighboring gene tRNA-Cys (anticodon GCA) 2-3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:37321241-37322042 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:37322043-37322844 Neighboring gene ADP ribosylation factor like GTPase 5C Neighboring gene uncharacterized LOC105371768 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:37331661-37332262 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:37333039-37333540 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:37333541-37334040 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:37340225-37340725 Neighboring gene calcium voltage-gated channel auxiliary subunit beta 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Chan PP, et al. Nucleic Acids Res, 2009 Jan. PMID 18984615, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • tRNA-Cys (GCA) 2-4
  • tRNA-Cys-GCA-2-3
  • transfer RNA cysteine 29 (anticodon GCA)
  • transfer RNA-Cys (GCA) 2-3
  • transfer RNA-Cys (GCA) 2-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    39154491..39154562 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    40018363..40018434 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
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