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TRA-AGC8-2 tRNA-Ala (anticodon AGC) 8-2 [ Homo sapiens (human) ]

Gene ID: 100189398, updated on 10-Oct-2023

Summary

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Official Symbol
TRA-AGC8-2provided by HGNC
Official Full Name
tRNA-Ala (anticodon AGC) 8-2provided by HGNC
Primary source
HGNC:HGNC:34966
See related
AllianceGenome:HGNC:34966
Gene type
tRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRNAA39
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Genomic context

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Location:
8q13.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (66114189..66114261)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (66539886..66539958)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (67026424..67026496)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancers GRCh37_chr8:67025273-67025924 and GRCh37_chr8:67025925-67026577 Neighboring gene tRNA-Tyr (anticodon GTA) 5-1 Neighboring gene tRNA-Tyr (anticodon GTA) 5-2 Neighboring gene tripartite motif containing 55 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr8:67035753-67036952 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:67038910-67039182 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27476 Neighboring gene uncharacterized LOC112268029 Neighboring gene uncharacterized LOC124901954 Neighboring gene corticotropin releasing hormone Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr8:67098699-67099309

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Chan PP, et al. Nucleic Acids Res, 2009 Jan. PMID 18984615, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • tRNA-Ala (AGC) 8-2
  • transfer RNA alanine 39 (anticodon AGC)
  • transfer RNA-Ala (AGC) 8-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    66114189..66114261
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    66539886..66539958
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
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