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TRN-GTT3-1 tRNA-Asn (anticodon GTT) 3-1 [ Homo sapiens (human) ]

Gene ID: 100189323, updated on 17-Sep-2024

Summary

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Official Symbol
TRN-GTT3-1provided by HGNC
Official Full Name
tRNA-Asn (anticodon GTT) 3-1provided by HGNC
Primary source
HGNC:HGNC:34890
See related
AllianceGenome:HGNC:34890
Gene type
tRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRNAN27
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Genomic context

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See TRN-GTT3-1 in Genome Data Viewer
Location:
1q21.1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (144419267..144419340)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (143647271..143647344, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (148598314..148598387, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene peptidylprolyl isomerase A like 4E Neighboring gene hESC enhancers GRCh37_chr1:148603911-148604598 and GRCh37_chr1:148766495-148767201 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:148603221-148603910 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:148760689-148761190 Neighboring gene RNA, variant U1 small nuclear 15 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1257 Neighboring gene NBPF member 15 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:148565664-148566164 Neighboring gene profilin 1 pseudogene 6 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:148555957-148556690 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:148555223-148555956 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:148552383-148552618 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:148548587-148549311 Neighboring gene uncharacterized LOC105371211

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Chan PP, et al. Nucleic Acids Res, 2009 Jan. PMID 18984615, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • tRNA-Asn (GTT) 3-1
  • transfer RNA asparagine 27 (anticodon GUU)
  • transfer RNA-Asn (GTT) 3-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    144419267..144419340
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    143647271..143647344 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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