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TRL-TAA1-1 tRNA-Leu (anticodon TAA) 1-1 [ Homo sapiens (human) ]

Gene ID: 100189313, updated on 10-Oct-2023

Summary

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Official Symbol
TRL-TAA1-1provided by HGNC
Official Full Name
tRNA-Leu (anticodon TAA) 1-1provided by HGNC
Primary source
HGNC:HGNC:34880
See related
AllianceGenome:HGNC:34880
Gene type
tRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRNAL29
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Genomic context

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Location:
6q24.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (144216547..144216629)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (145409170..145409252)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (144537684..144537766)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17638 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:144507610-144508110 Neighboring gene Sharpr-MPRA regulatory region 5218 Neighboring gene syntaxin 11 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:144537315-144537779 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25213 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17639 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:144550475-144550694 Neighboring gene TPT1 pseudogene 4 Neighboring gene MPRA-validated peak6183 silencer Neighboring gene MPRA-validated peak6184 silencer Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:144586575-144587308 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr6:144587309-144588042 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17641 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25214 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17640 Neighboring gene uncharacterized LOC124901418 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25215 Neighboring gene Sharpr-MPRA regulatory region 1397 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:144647748-144648492 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:144651868-144653067 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25216 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25218 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25217 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:144666170-144666670 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:144666671-144667171 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25219 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25220 Neighboring gene utrophin Neighboring gene Sharpr-MPRA regulatory region 7657 Neighboring gene rhomboid domain containing 1 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Chan PP, et al. Nucleic Acids Res, 2009 Jan. PMID 18984615, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • tRNA-Leu (TAA) 1-1
  • transfer RNA leucine 29 (anticodon UAA)
  • transfer RNA-Leu (TAA) 1-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    144216547..144216629
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    145409170..145409252
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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