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TRI-TAT2-1 tRNA-Ile (anticodon TAT) 2-1 [ Homo sapiens (human) ]

Gene ID: 100189265, updated on 10-Oct-2023

Summary

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Official Symbol
TRI-TAT2-1provided by HGNC
Official Full Name
tRNA-Ile (anticodon TAT) 2-1provided by HGNC
Primary source
HGNC:HGNC:34828
See related
AllianceGenome:HGNC:34828
Gene type
tRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRNAI13
Expression
Ubiquitous expression in fat (RPKM 1.4), ovary (RPKM 1.4) and 24 other tissues See more
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Genomic context

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Location:
2p21
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (42810536..42810628)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (42816106..42816198)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (43037676..43037768)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:42994558-42995463 Neighboring gene 3-hydroxyanthranilate 3,4-dioxygenase Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11411 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11412 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11413 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15652 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15653 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11414 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11415 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15654 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15655 Neighboring gene FTO pseudogene 1 Neighboring gene CHORDC1 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:43081225-43082057 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:43084375-43084962 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:43133493-43134102 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:43134103-43134710 Neighboring gene uncharacterized LOC105374568

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • tRNA-Ile (TAT) 2-1
  • transfer RNA isoleucine 13 (anticodon UAU)
  • transfer RNA-Ile (TAT) 2-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    42810536..42810628
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    42816106..42816198
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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