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TRS-AGA2-5 tRNA-Ser (anticodon AGA) 2-5 [ Homo sapiens (human) ]

Gene ID: 100189248, updated on 10-Oct-2023

Summary

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Official Symbol
TRS-AGA2-5provided by HGNC
Official Full Name
tRNA-Ser (anticodon AGA) 2-5provided by HGNC
Primary source
HGNC:HGNC:34811
See related
AllianceGenome:HGNC:34811
Gene type
tRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRNAS20; TRS-AGA2-6
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Genomic context

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Location:
8q22.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (95269657..95269738, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (96394913..96394994, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (96281885..96281966, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27651 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27652 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27653 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27654 Neighboring gene long intergenic non-protein coding RNA 1298 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27655 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:96281415-96282054 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27656 Neighboring gene CFAP418 antisense RNA 1 Neighboring gene cilia and flagella associated protein 418 Neighboring gene NANOG hESC enhancer GRCh37_chr8:96398681-96399258 Neighboring gene NANOG hESC enhancer GRCh37_chr8:96442743-96443274 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr8:96478176-96479375 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:96570145-96570805 Neighboring gene RNA, U6 small nuclear 690, pseudogene Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:96693685-96694212 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:96694213-96694738 Neighboring gene uncharacterized LOC107986957 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27657 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27658

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Chan PP, et al. Nucleic Acids Res, 2009 Jan. PMID 18984615, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • tRNA-Ser-AGA-2-5
  • tRNA-Ser-AGA-2-6
  • transfer RNA serine 20 (anticodon AGA)
  • transfer RNA-Ser (AGA) 2-5
  • transfer RNA-Ser (AGA) 2-6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    95269657..95269738 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    96394913..96394994 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
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