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TRS-GCT4-1 tRNA-Ser (anticodon GCT) 4-1 [ Homo sapiens (human) ]

Gene ID: 100189225, updated on 17-Sep-2024

Summary

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Official Symbol
TRS-GCT4-1provided by HGNC
Official Full Name
tRNA-Ser (anticodon GCT) 4-1provided by HGNC
Primary source
HGNC:HGNC:34788
See related
AllianceGenome:HGNC:34788
Gene type
tRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRNAS17; TRS-GCT4-3
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Genomic context

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See TRS-GCT4-1 in Genome Data Viewer
Location:
6p22.1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (28597340..28597421, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (28468715..28468796, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (28565117..28565198, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986586 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:28511751-28512333 Neighboring gene tRNA-Arg (anticodon TCG) 5-1 Neighboring gene SCAN domain containing 3 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:28554695-28555571 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr6:28557063-28557742 Neighboring gene ZBED9 antisense RNA 1 Neighboring gene tRNA-Gln (anticodon TTG) 2-1 Neighboring gene tRNA-Ala (anticodon AGC) 3-1 Neighboring gene COX8C pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Chan PP, et al. Nucleic Acids Res, 2009 Jan. PMID 18984615, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • tRNA-Ser-GCT-4-1
  • tRNA-Ser-GCT-4-3
  • transfer RNA serine 17 (anticodon GCU)
  • transfer RNA-Ser (GCT) 4-1
  • transfer RNA-Ser (GCT) 4-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    28597340..28597421 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_2

Genomic

  1. NT_113891.3 Reference GRCh38.p14 ALT_REF_LOCI_2

    Range
    87211..87292 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    28468715..28468796 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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