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TRC-GCA5-1 tRNA-Cys (anticodon GCA) 5-1 [ Homo sapiens (human) ]

Gene ID: 100189155, updated on 10-Oct-2023

Summary

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Official Symbol
TRC-GCA5-1provided by HGNC
Official Full Name
tRNA-Cys (anticodon GCA) 5-1provided by HGNC
Primary source
HGNC:HGNC:34717
See related
AllianceGenome:HGNC:34717
Gene type
tRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRNAC12
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Genomic context

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Location:
15q25.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (79744655..79744727)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (77607982..77608054)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (80036997..80037069)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124903591 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:79929949-79930520 Neighboring gene KIAA1024-RPS12P25 intergenic ENCODE-defined enhancer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9933 Neighboring gene RPL7L1 pseudogene 15 Neighboring gene ribosomal protein S12 pseudogene 25 Neighboring gene RNA, U6 small nuclear 667, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Chan PP, et al. Nucleic Acids Res, 2009 Jan. PMID 18984615, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • tRNA-Cys (GCA) 5-1
  • transfer RNA cysteine 12 (anticodon GCA)
  • transfer RNA-Cys (GCA) 5-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    79744655..79744727
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    77607982..77608054
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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