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TRM-CAT2-1 tRNA-Met (anticodon CAT) 2-1 [ Homo sapiens (human) ]

Gene ID: 100189135, updated on 10-Oct-2023

Summary

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Official Symbol
TRM-CAT2-1provided by HGNC
Official Full Name
tRNA-Met (anticodon CAT) 2-1provided by HGNC
Primary source
HGNC:HGNC:34697
See related
AllianceGenome:HGNC:34697
Gene type
tRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRNAM9
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Genomic context

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Location:
16q22.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (71426493..71426565)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (77243748..77243820)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (71460396..71460468)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371332 Neighboring gene Sharpr-MPRA regulatory region 5468 Neighboring gene calbindin 2 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr16:71420497-71421047 Neighboring gene hESC enhancers GRCh37_chr16:71421048-71421598 and GRCh37_chr16:71421599-71422149 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_43990 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:71423333-71423878 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:71445925-71446426 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11071 Neighboring gene long intergenic non-protein coding RNA 2136 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:71459785-71460285 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11072 Neighboring gene TLE family member 7 Neighboring gene zinc finger protein 23 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11073 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11074

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Chan PP, et al. Nucleic Acids Res, 2009 Jan. PMID 18984615, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • tRNA-Met (CAT) 2-1
  • transfer RNA methionine 9 (anticodon CAU)
  • transfer RNA-Met (CAT) 2-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    71426493..71426565
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    77243748..77243820
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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