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TRT-CGT2-1 tRNA-Thr (anticodon CGT) 2-1 [ Homo sapiens (human) ]

Gene ID: 100189086, updated on 10-Oct-2023

Summary

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Official Symbol
TRT-CGT2-1provided by HGNC
Official Full Name
tRNA-Thr (anticodon CGT) 2-1provided by HGNC
Primary source
HGNC:HGNC:34646
See related
AllianceGenome:HGNC:34646
Gene type
tRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRNAT6
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Genomic context

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Location:
16p13.12
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (14285893..14285964)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (14323156..14323227)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (14379750..14379821)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene myocardin related transcription factor B Neighboring gene uncharacterized LOC124903783 Neighboring gene TVP23C pseudogene 2 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr16:14339016-14340215 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:14375643-14376144 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr16:14377689-14378337 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:14379019-14380016 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10491 Neighboring gene Sharpr-MPRA regulatory region 5476 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7229 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:14396656-14396816 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7231 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:14400327-14401012 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:14401013-14401697 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10492 Neighboring gene MIR193b-365a host gene Neighboring gene microRNA 193b Neighboring gene microRNA 365a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Chan PP, et al. Nucleic Acids Res, 2009 Jan. PMID 18984615, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • tRNA-Thr-CGT-2-1
  • transfer RNA threonine 6 (anticodon CGU)
  • transfer RNA-Thr (CGT) 2-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    14285893..14285964
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    14323156..14323227
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
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