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TRE-TTC2-2 tRNA-Glu (anticodon TTC) 2-2 [ Homo sapiens (human) ]

Gene ID: 100189063, updated on 10-Oct-2023

Summary

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Official Symbol
TRE-TTC2-2provided by HGNC
Official Full Name
tRNA-Glu (anticodon TTC) 2-2provided by HGNC
Primary source
HGNC:HGNC:34622
See related
AllianceGenome:HGNC:34622
Gene type
tRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRNAE11
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Genomic context

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See TRE-TTC2-2 in Genome Data Viewer
Location:
15q12
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (26082234..26082305, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (23822665..23822736, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (26327381..26327452, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2346 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:26175613-26176114 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:26176115-26176614 Neighboring gene MRPS18C pseudogene 5 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:26187987-26188487 Neighboring gene small nucleolar RNA SNORA48 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6266 Neighboring gene uncharacterized LOC105370739 Neighboring gene Sharpr-MPRA regulatory region 9219 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:26371289-26371981 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:26375077-26375665 Neighboring gene long intergenic non-protein coding RNA 929 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:26421889-26422390 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:26422391-26422890 Neighboring gene NANOG hESC enhancer GRCh37_chr15:26476139-26476674 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:26481073-26481711 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:26485506-26486446 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr15:26488201-26488985 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:26505515-26506014 Neighboring gene uncharacterized LOC124903568

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Chan PP, et al. Nucleic Acids Res, 2009 Jan. PMID 18984615, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • tRNA-Glu (TTC) 2-2
  • transfer RNA glutamic acid 11 (anticodon UUC)
  • transfer RNA-Glu (TTC) 2-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    26082234..26082305 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    23822665..23822736 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
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