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TRA-CGC3-1 tRNA-Ala (anticodon CGC) 3-1 [ Homo sapiens (human) ]

Gene ID: 100189021, updated on 10-Oct-2023

Summary

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Official Symbol
TRA-CGC3-1provided by HGNC
Official Full Name
tRNA-Ala (anticodon CGC) 3-1provided by HGNC
Primary source
HGNC:HGNC:34580
See related
AllianceGenome:HGNC:34580
Gene type
tRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRNAA4
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Genomic context

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Location:
2q24.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (156400769..156400840)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (156853579..156853650)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (157257281..157257352)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:157197537-157198092 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:157198093-157198646 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12018 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16661 Neighboring gene uncharacterized LOC124906082 Neighboring gene uncharacterized LOC440918 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16662 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16663 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12019 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12020 Neighboring gene tRNA-Gly (anticodon GCC) 2-2 Neighboring gene small nucleolar RNA U13 Neighboring gene glycerol-3-phosphate dehydrogenase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Chan PP, et al. Nucleic Acids Res, 2009 Jan. PMID 18984615, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • tRNA-Ala (CGC) 3-1
  • transfer RNA alanine 4 (anticodon CGC)
  • transfer RNA-Ala (CGC) 3-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    156400769..156400840
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    156853579..156853650
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
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