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LOC100185054 major vault protein [ Ciona intestinalis (vase tunicate) ]

Gene ID: 100185054, updated on 21-Dec-2023

Summary

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Gene symbol
LOC100185054
Gene description
major vault protein
See related
Ensembl:ENSCING00000012198
Gene type
protein coding
RefSeq status
MODEL
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
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Genomic context

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See LOC100185054 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
19
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) 5 NC_020170.2 (2883520..2895650)

Chromosome 5 - NC_020170.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100177980 Neighboring gene uncharacterized LOC113474283 Neighboring gene alpha-adducin Neighboring gene beta-transducin repeat-containing homologue protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_020170.2 Chromosome 5 Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An integrated database of the ascidian, Ciona intestinalis: towards functional genomics. Satou Y, et al. Zoolog Sci, 2005 Aug. PMID 16141696
  2. A cDNA resource from the basal chordate Ciona intestinalis. Satou Y, et al. Genesis, 2002 Aug. PMID 12203911
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
major vault protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NC_020170.2 Reference KH Primary Assembly

    Range
    2883520..2895650
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018811906.2 → XP_018667451.1  major vault protein isoform X2

    UniProtKB/TrEMBL
    F7B9N2

  2. XM_018811905.2 → XP_018667450.1  major vault protein isoform X1

    UniProtKB/TrEMBL
    F7B9N2

  3. XM_002119281.5 → XP_002119317.2  major vault protein isoform X3

    UniProtKB/TrEMBL
    F7B9N2
    Related
    ENSCINP00000018892
    Conserved Domains (5) summary
    PTZ00491
    Location:12 → 843
    PTZ00491; major vault protein; Provisional
    cd08825
    Location:511 → 663
    MVP_shoulder; Shoulder domain of the major vault protein
    pfam01505
    Location:123 → 161
    Vault; Major Vault Protein repeat
    cl19107
    Location:794 → 843
    SPFH_like; core domain of the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily
    cl21478
    Location:683 → 774
    ATP-synt_B; ATP synthase B/B' CF(0)
Nucleotide Protein
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