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LOC100182874 DNA-directed RNA polymerases I, II, and III subunit RPABC1 [ Ciona intestinalis (vase tunicate) ]

Gene ID: 100182874, updated on 21-Dec-2023

Summary

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Gene symbol
LOC100182874
Gene description
DNA-directed RNA polymerases I, II, and III subunit RPABC1
See related
Ensembl:ENSCING00000024933
Gene type
protein coding
RefSeq status
MODEL
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
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Genomic context

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See LOC100182874 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) 4 NC_020169.2 (1746071..1747059, complement)

Chromosome 4 - NC_020169.2Genomic Context describing neighboring genes Neighboring gene STE20-like serine/threonine-protein kinase Neighboring gene fatty acid synthase Neighboring gene sorting nexin-6 Neighboring gene POU domain, class 2, transcription factor 1 Neighboring gene platelet-activating factor acetylhydrolase IB subunit beta-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_020169.2 Chromosome 4 Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of RNA polymerase II, core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of RNA polymerase III complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerases I, II, and III subunit RPABC1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NC_020169.2 Reference KH Primary Assembly

    Range
    1746071..1747059 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002130559.5 → XP_002130595.1  DNA-directed RNA polymerases I, II, and III subunit RPABC1

    UniProtKB/TrEMBL
    H2XJG6
    Related
    ENSCINP00000029798
    Conserved Domains (3) summary
    PLN03111
    Location:1 → 209
    PLN03111; DNA-directed RNA polymerase II subunit family protein; Provisional
    pfam01191
    Location:138 → 209
    RNA_pol_Rpb5_C; RNA polymerase Rpb5, C-terminal domain
    pfam03871
    Location:4 → 92
    RNA_pol_Rpb5_N; RNA polymerase Rpb5, N-terminal domain
Nucleotide Protein
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