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LOC100181206 UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit [ Ciona intestinalis (vase tunicate) ]

Gene ID: 100181206, updated on 21-Dec-2023

Summary

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Gene symbol
LOC100181206
Gene description
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit
Gene type
protein coding
RefSeq status
MODEL
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
Also known as
ogt
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Genomic context

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See LOC100181206 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
21
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) 5 NC_020170.2 (1353752..1362109, complement)

Chromosome 5 - NC_020170.2Genomic Context describing neighboring genes Neighboring gene Alpha-(1,6)-fucosyltransferase-like Neighboring gene 26S proteasome non-ATPase regulatory subunit 10 Neighboring gene uncharacterized LOC113474230 Neighboring gene somatostatin receptor type 5 Neighboring gene uncharacterized LOC104265696

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_020170.2 Chromosome 5 Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A cDNA resource from the basal chordate Ciona intestinalis. Satou Y, et al. Genesis, 2002 Aug. PMID 12203911
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit
Names
O-linked N-acetylglucosamine (GlcNAc) transferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NC_020170.2 Reference KH Primary Assembly

    Range
    1353752..1362109 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009860267.3 → XP_009858569.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X1

    UniProtKB/TrEMBL
    F6PXA1
    Conserved Domains (6) summary
    COG0457
    Location:210 → 467
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG3914
    Location:341 → 1032
    Spy; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
    sd00006
    Location:333 → 361
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:95 → 128
    TPR_1; Tetratricopeptide repeat
    pfam13431
    Location:219 → 252
    TPR_17; Tetratricopeptide repeat
    pfam13844
    Location:562 → 1028
    Glyco_transf_41; Glycosyl transferase family 41

  2. XM_009860268.3 → XP_009858570.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X2

    UniProtKB/TrEMBL
    F6PXA1
    Conserved Domains (8) summary
    COG0457
    Location:208 → 465
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG3914
    Location:339 → 1030
    Spy; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
    sd00006
    Location:331 → 359
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:93 → 126
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:93 → 158
    TPR_11; TPR repeat
    pfam13424
    Location:157 → 227
    TPR_12; Tetratricopeptide repeat
    pfam13431
    Location:217 → 250
    TPR_17; Tetratricopeptide repeat
    pfam13844
    Location:560 → 1026
    Glyco_transf_41; Glycosyl transferase family 41
Nucleotide Protein
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