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LOC100179839 sorting nexin-4-like [ Ciona intestinalis (vase tunicate) ]

Gene ID: 100179839, updated on 21-Dec-2023

Summary

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Gene symbol
LOC100179839
Gene description
sorting nexin-4-like
See related
Ensembl:ENSCING00000004454
Gene type
protein coding
RefSeq status
MODEL
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
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Genomic context

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See LOC100179839 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) Unplaced Scaffold NW_004190423.2 (423501..426059, complement)

NW_004190423.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113475092 Neighboring gene sphingosine-1-phosphate phosphatase 1-like Neighboring gene uncharacterized LOC100177486 Neighboring gene solute carrier family 2, facilitated glucose transporter member 5-like Neighboring gene discoidin, CUB and LCCL domain-containing protein 2 Neighboring gene uncharacterized LOC113475096

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004190423 Unplaced Scaffold Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sorting nexin-4-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NW_004190423.2 Reference KH Primary Assembly

    Range
    423501..426059 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002119469.4 → XP_002119505.1  sorting nexin-4-like

    UniProtKB/TrEMBL
    A0A1W2W5S0, F6USY8
    Related
    ENSCINP00000009207
    Conserved Domains (2) summary
    cd06864
    Location:42 → 169
    PX_SNX4; The phosphoinositide binding Phox Homology domain of Sorting Nexin 4
    cd07622
    Location:190 → 434
    BAR_SNX4; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4
Nucleotide Protein
Heading Accession and Version

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