U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC100177856 mediator of RNA polymerase II transcription subunit 23-like [ Ciona intestinalis (vase tunicate) ]

Gene ID: 100177856, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC100177856
Gene description
mediator of RNA polymerase II transcription subunit 23-like
See related
Ensembl:ENSCING00000001495
Gene type
protein coding
RefSeq status
MODEL
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC100177856 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
34
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) 4 NC_020169.2 (2780840..2802240, complement)

Chromosome 4 - NC_020169.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113474202 Neighboring gene sodium-dependent glucose transporter 1A Neighboring gene G-protein coupled receptor 84-like Neighboring gene uncharacterized LOC113474200 Neighboring gene uncharacterized LOC104265655 Neighboring gene caspase-2-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_020169.2 Chromosome 4 Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in positive regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mediator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
mediator of RNA polymerase II transcription subunit 23-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NC_020169.2 Reference KH Primary Assembly

    Range
    2780840..2802240 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018811632.2 → XP_018667177.1  mediator of RNA polymerase II transcription subunit 23-like isoform X2

    UniProtKB/TrEMBL
    F6THF9

  2. XM_009860008.3 → XP_009858310.1  mediator of RNA polymerase II transcription subunit 23-like isoform X1

    UniProtKB/TrEMBL
    F6THF9
    Conserved Domains (1) summary
    pfam11573
    Location:4 → 1341
    Med23; Mediator complex subunit 23
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials