U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC100176271 conserved oligomeric Golgi complex subunit 5 [ Ciona intestinalis (vase tunicate) ]

Gene ID: 100176271, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC100176271
Gene description
conserved oligomeric Golgi complex subunit 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
Also known as
cog5
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC100176271 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) Unplaced Scaffold NW_004190381.2 (28264..56080, complement)

NW_004190381.2Genomic Context describing neighboring genes Neighboring gene C-type mannose receptor 2-like Neighboring gene uncharacterized LOC108950211 Neighboring gene uncharacterized LOC100184969 Neighboring gene uncharacterized LOC113474956 Neighboring gene uncharacterized LOC113474959 Neighboring gene uncharacterized LOC100180955 Neighboring gene uncharacterized LOC100187354

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_004190381 Unplaced Scaffold Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. An integrated database of the ascidian, Ciona intestinalis: towards functional genomics. Satou Y, et al. Zoolog Sci, 2005 Aug. PMID 16141696
  2. A cDNA resource from the basal chordate Ciona intestinalis. Satou Y, et al. Genesis, 2002 Aug. PMID 12203911
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in intra-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Golgi transport complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
conserved oligomeric Golgi complex subunit 5
Names
component of oligomeric golgi complex 5

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NW_004190381.2 Reference KH Primary Assembly

    Range
    28264..56080 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002121952.4 → XP_002121988.1  conserved oligomeric Golgi complex subunit 5

    UniProtKB/TrEMBL
    A0A1W2W2F5
    Conserved Domains (1) summary
    pfam10392
    Location:21 → 144
    COG5; Golgi transport complex subunit 5
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.