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TEF TEF transcription factor, PAR bZIP family member [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100173555, updated on 26-Mar-2024

Summary

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Gene symbol
TEF
Gene description
TEF transcription factor, PAR bZIP family member
Locus tag
CR201_G0031949
See related
Ensembl:ENSPPYG00000011867
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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See TEF in Genome Data Viewer
Location:
chromosome: 23
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 23 NC_085929.1 (47839499..47871716)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 22 NC_072007.1 (26937269..26969450)

Chromosome 23 - NC_085929.1Genomic Context describing neighboring genes Neighboring gene L3MBTL histone methyl-lysine binding protein 2 Neighboring gene chondroadherin like Neighboring gene Ran GTPase activating protein 1 Neighboring gene zinc finger CCCH-type containing 7B Neighboring gene uncharacterized LOC100939619 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC129052738 Neighboring gene transducer of ERBB2, 2 Neighboring gene PHD finger protein 5A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • DKFZp459A027

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
thyrotroph embryonic factor
Names
TEF, PAR bZIP transcription factor
thyrotrophic embryonic factor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001133092.1 → NP_001126564.1  thyrotroph embryonic factor

    See identical proteins and their annotated locations for NP_001126564.1

    Status: PROVISIONAL

    Source sequence(s)
    CR860549
    UniProtKB/TrEMBL
    Q5R6E2

RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_085929.1 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    47839499..47871716
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009234403.4 → XP_009232678.1  thyrotroph embryonic factor isoform X3

    See identical proteins and their annotated locations for XP_009232678.1

    UniProtKB/TrEMBL
    A0A2J8TWT3, A0A6D2W236, Q5R9N9
    Related
    ENSPPYP00000013243.2
    Conserved Domains (1) summary
    cd14695
    Location:202 → 260
    bZIP_HLF; Basic leucine zipper (bZIP) domain of Hepatic leukemia factor (HLF) and similar proteins: a DNA-binding and dimerization domain

  2. XM_009234402.3 → XP_009232677.1  thyrotroph embryonic factor isoform X1

    See identical proteins and their annotated locations for XP_009232677.1

    UniProtKB/TrEMBL
    A0A2J8TWS0, A0A8I5TDV2
    Related
    ENSPPYP00000032858.1
    Conserved Domains (1) summary
    cd14695
    Location:232 → 290
    bZIP_HLF; Basic leucine zipper (bZIP) domain of Hepatic leukemia factor (HLF) and similar proteins: a DNA-binding and dimerization domain

  3. XM_054542969.2 → XP_054398944.1  thyrotroph embryonic factor isoform X2

    UniProtKB/TrEMBL
    A0A8I5YQJ8
Nucleotide Protein
Heading Accession and Version

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