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CDH2 cadherin 2 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100172774, updated on 26-Mar-2024

Summary

Gene symbol
CDH2
Gene description
cadherin 2
Locus tag
CR201_G0002210
See related
Ensembl:ENSPPYG00000009082
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
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Genomic context

See CDH2 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 17 NC_072002.2 (42193251..42419527, complement)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 18 NC_072003.1 (22574265..22800754, complement)

Chromosome 17 - NC_072002.2Genomic Context describing neighboring genes Neighboring gene proliferation-associated protein 2G4-like Neighboring gene uncharacterized LOC129051675 Neighboring gene uncharacterized LOC129051527 Neighboring gene uncharacterized LOC134760292 Neighboring gene E3 ubiquitin-protein ligase ARIH2-like

Genomic regions, transcripts, and products

General gene information

Markers

Clone Names

  • DKFZp459D081, DKFZp469B1218

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in apical part of cell IEA
Inferred from Electronic Annotation
more info
PubMed 
part_of catenin complex IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in intercalated disc IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in lamellipodium IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in postsynaptic density IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in postsynaptic specialization membrane IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in presynaptic active zone membrane IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
cadherin-2
Names
N-cadherin
cadherin 2, type 1, N-cadherin (neuronal)
neural cadherin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001132373.1NP_001125845.1  cadherin-2 precursor

    Status: PROVISIONAL

    Source sequence(s)
    CR858840, CR859259
    UniProtKB/Swiss-Prot
    Q5R9X1
    Related
    ENSPPYP00000039315.1, ENSPPYT00000053883.1
    Conserved Domains (4) summary
    cd11304
    Location:273378
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam01049
    Location:759902
    Cadherin_C; Cadherin cytoplasmic region
    pfam08758
    Location:31121
    Cadherin_pro; Cadherin prodomain like
    cl09101
    Location:163263
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_072002.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    42193251..42419527 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)