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DPY19L3 dpy-19 like C-mannosyltransferase 3 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100172167, updated on 10-Oct-2024

Summary

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Gene symbol
DPY19L3
Gene description
dpy-19 like C-mannosyltransferase 3
Locus tag
CR201_G0050093
See related
Ensembl:ENSPPYG00000009816
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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See DPY19L3 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 20 NC_072005.2 (37697563..37777542)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 19 NC_072004.1 (43451864..43531767)

Chromosome 20 - NC_072005.2Genomic Context describing neighboring genes Neighboring gene zinc finger protein 507 Neighboring gene uncharacterized LOC103893101 Neighboring gene small nucleolar RNA SNORA68 Neighboring gene programmed cell death 5 Neighboring gene ankyrin repeat domain 27

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • DKFZp469K0710

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein C-mannosyl-transferase DPY19L3; probable C-mannosyltransferase DPY19L3
Names
Protein dpy-19 homolog 3
dpy-19 like 3
dpy-19-like 3
dpy-19-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001131798.1 → NP_001125270.1  protein C-mannosyl-transferase DPY19L3

    See identical proteins and their annotated locations for NP_001125270.1

    Status: PROVISIONAL

    Source sequence(s)
    CR858276
    UniProtKB/TrEMBL
    A0A2J8RL56
    Related
    ENSPPYP00000010991.2, ENSPPYT00000011420.2
    Conserved Domains (1) summary
    pfam10034
    Location:56 → 669
    Dpy19; Q-cell neuroblast polarization

RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_072005.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    37697563..37777542
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024236276.3 → XP_024092044.3  probable C-mannosyltransferase DPY19L3 isoform X1

  2. XM_054538346.2 → XP_054394321.2  probable C-mannosyltransferase DPY19L3 isoform X4

  3. XM_024236275.3 → XP_024092043.3  probable C-mannosyltransferase DPY19L3 isoform X1

  4. XM_063719114.1 → XP_063575184.1  probable C-mannosyltransferase DPY19L3 isoform X3

  5. XM_063719113.1 → XP_063575183.1  probable C-mannosyltransferase DPY19L3 isoform X2

  6. XM_024236277.3 → XP_024092045.3  probable C-mannosyltransferase DPY19L3 isoform X1

  7. XM_054538347.2 → XP_054394322.2  probable C-mannosyltransferase DPY19L3 isoform X5

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5RCJ4.2 GenPept UniProtKB/Swiss-Prot:Q5RCJ4

Gene LinkOut

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