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SLC39A8 solute carrier family 39 member 8 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100171966, updated on 10-Oct-2024

Summary

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Gene symbol
SLC39A8
Gene description
solute carrier family 39 member 8
Locus tag
CR201_G0000662
See related
Ensembl:ENSPPYG00000014964
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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See SLC39A8 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 3 NC_071988.2 (123830135..124069992, complement)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 4 NC_071989.1 (123867412..124107269, complement)

Chromosome 3 - NC_071988.2Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene B cell scaffold protein with ankyrin repeats 1 Neighboring gene uncharacterized LOC129059044 Neighboring gene zinc finger protein 705A-like Neighboring gene uncharacterized LOC129058813 Neighboring gene nuclear factor kappa B subunit 1 Neighboring gene keratin, type II cytoskeletal 8-like Neighboring gene mannosidase beta Neighboring gene protein MANBAL-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • DKFZp469F0128

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables monoatomic cation:bicarbonate symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular monoatomic cation homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in zinc ion import across plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
metal cation symporter ZIP8
Names
solute carrier family 39 (zinc transporter), member 8

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001131612.1 → NP_001125084.1  metal cation symporter ZIP8

    See identical proteins and their annotated locations for NP_001125084.1

    Status: PROVISIONAL

    Source sequence(s)
    CR857971
    UniProtKB/TrEMBL
    Q5RDE2
    Related
    ENSPPYP00000031657.1, ENSPPYT00000060442.1
    Conserved Domains (1) summary
    pfam02535
    Location:14 → 237
    Zip; ZIP Zinc transporter

RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_071988.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    123830135..124069992 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054553189.1 → XP_054409164.1  metal cation symporter ZIP8 isoform X1

    UniProtKB/TrEMBL
    A0A2J8XQV0, H2PE03

  2. XM_024245496.3 → XP_024101264.1  metal cation symporter ZIP8 isoform X1

    UniProtKB/TrEMBL
    A0A2J8XQU4, A0A2J8XQV0, H2PE03
    Conserved Domains (1) summary
    pfam02535
    Location:126 → 451
    Zip; ZIP Zinc transporter
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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