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IDH1 isocitrate dehydrogenase (NADP(+)) 1 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100171634, updated on 26-Mar-2024

Summary

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Gene symbol
IDH1
Gene description
isocitrate dehydrogenase (NADP(+)) 1
Locus tag
CR201_G0007031
See related
Ensembl:ENSPPYG00000013125
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Also known as
IDPc
Orthologs
human mouse all
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Genomic context

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See IDH1 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 11 NC_071996.2 (111585848..111604246, complement)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 2B NC_071987.1 (108942284..108960649, complement)

Chromosome 11 - NC_071996.2Genomic Context describing neighboring genes Neighboring gene chromosome 11 C2orf80 homolog Neighboring gene uncharacterized LOC129058109 Neighboring gene translationally-controlled tumor protein-like Neighboring gene phosphoinositide kinase, FYVE-type zinc finger containing Neighboring gene parathyroid hormone 2 receptor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • DKFZp469B2212, DKFZp469E0917

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables isocitrate dehydrogenase (NADP+) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in NADP metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in isocitrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
isocitrate dehydrogenase [NADP] cytoplasmic
Names
IDH
IDP
NADP(+)-specific ICDH
cytosolic NADP-isocitrate dehydrogenase
isocitrate dehydrogenase (NADP(+)) 1, cytosolic
isocitrate dehydrogenase 1 (NADP+), soluble
oxalosuccinate decarboxylase
NP_001124781.1
XP_009236322.2
XP_009236323.2
XP_009236324.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001131309.1 → NP_001124781.1  isocitrate dehydrogenase [NADP] cytoplasmic

    See identical proteins and their annotated locations for NP_001124781.1

    Status: PROVISIONAL

    Source sequence(s)
    CR859464
    UniProtKB/Swiss-Prot
    Q5R9C5
    Conserved Domains (1) summary
    PTZ00435
    Location:1 → 411
    PTZ00435; isocitrate dehydrogenase; Provisional

RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_071996.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    111585848..111604246 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009238047.4 → XP_009236322.2  isocitrate dehydrogenase [NADP] cytoplasmic isoform X1

  2. XM_009238048.4 → XP_009236323.2  isocitrate dehydrogenase [NADP] cytoplasmic isoform X1

  3. XM_009238049.2 → XP_009236324.2  isocitrate dehydrogenase [NADP] cytoplasmic isoform X1

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5R9C5.2 GenPept UniProtKB/Swiss-Prot:Q5R9C5

Gene LinkOut

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