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AMACR alpha-methylacyl-CoA racemase [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100171562, updated on 26-Mar-2024

Summary

Gene symbol
AMACR
Gene description
alpha-methylacyl-CoA racemase
See related
Ensembl:ENSPPYG00000015386
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
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Genomic context

See AMACR in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 4 NC_071989.2 (34564737..34584389, complement)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 5 NC_071990.1 (34564759..34584407, complement)

Chromosome 4 - NC_071989.2Genomic Context describing neighboring genes Neighboring gene 26S proteasome regulatory subunit 10B-like Neighboring gene solute carrier family 45 member 2 Neighboring gene relaxin family peptide receptor 3 Neighboring gene C1q and TNF related 3 Neighboring gene retinoic acid induced 14

Genomic regions, transcripts, and products

General gene information

Markers

Clone Names

  • DKFZp469O1232

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-methylacyl-CoA racemase activity IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in bile acid metabolic process IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
alpha-methylacyl-CoA racemase
NP_001124714.1
XP_054410986.1
XP_063579925.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001131242.1NP_001124714.1  alpha-methylacyl-CoA racemase

    See identical proteins and their annotated locations for NP_001124714.1

    Status: PROVISIONAL

    Source sequence(s)
    CR857309
    UniProtKB/TrEMBL
    A0A8I5TUE1, Q5RF52
    Related
    ENSPPYP00000042907.1, ENSPPYT00000038705.1
    Conserved Domains (1) summary
    COG1804
    Location:3373
    CaiB; Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases [Lipid transport and metabolism]

RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_071989.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    34564737..34584389 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054555011.2XP_054410986.1  alpha-methylacyl-CoA racemase isoform X1

  2. XM_063723855.1XP_063579925.1  alpha-methylacyl-CoA racemase isoform X2