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RPN1 ribophorin I [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100171515, updated on 26-Mar-2024

Summary

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Gene symbol
RPN1
Gene description
ribophorin I
Locus tag
CR201_G0032083
See related
Ensembl:ENSPPYG00000013432
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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See RPN1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 2 NC_085928.1 (9133016..9163723)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 3 NC_071988.1 (9242304..9272705)

Chromosome 2 - NC_085928.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA24 Neighboring gene POU domain, class 5, transcription factor 1-like Neighboring gene uncharacterized LOC129058319 Neighboring gene transmembrane emp24 domain-containing protein 10-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • DKFZp469O2032

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in protein N-linked glycosylation via asparagine IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of oligosaccharyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1
Names
RPN-I
dolichyl-diphosphooligosaccharide--protein glycosyltransferase 67 kDa subunit
ribophorin-1
NP_001124670.1
XP_063577572.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001131198.1 → NP_001124670.1  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 precursor

    See identical proteins and their annotated locations for NP_001124670.1

    Status: PROVISIONAL

    Source sequence(s)
    CR857244
    UniProtKB/Swiss-Prot
    Q5RFB6
    UniProtKB/TrEMBL
    A0A2J8TVB6
    Related
    ENSPPYP00000015025.3, ENSPPYT00000015625.3
    Conserved Domains (2) summary
    pfam04597
    Location:33 → 457
    Ribophorin_I; Ribophorin I
    pfam10482
    Location:519 → 596
    CtIP_N; tumor-suppressor protein CtIP N-terminal domain

RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_085928.1 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    9133016..9163723
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063721502.1 → XP_063577572.1  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 isoform X1

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5RFB6.1 GenPept UniProtKB/Swiss-Prot:Q5RFB6

Gene LinkOut

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