U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LPIN3 lipin 3 [ Sus scrofa (pig) ]

Gene ID: 100170771, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
LPIN3provided by VGNC
Official Full Name
lipin 3provided by VGNC
Primary source
VGNC:VGNC:95619
See related
Ensembl:ENSSSCG00000007359
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in subcutaneous adipose (RPKM 8.1), kidney (RPKM 4.6) and 8 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LPIN3 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
20
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 17 NC_010459.5 (43993710..44006188)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 17 NC_010459.4 (49433516..49450557)

Chromosome 17 - NC_010459.5Genomic Context describing neighboring genes Neighboring gene zinc fingers and homeoboxes 3 Neighboring gene receptor-binding cancer antigen expressed on SiSo cells pseudogene Neighboring gene elastin microfibril interfacer 3 Neighboring gene chromodomain helicase DNA binding protein 6 Neighboring gene ras-related protein R-Ras pseudogene

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Molecular characterization, chromosomal localization and association analysis with back-fat thickness of porcine LPIN2 and LPIN3. He X, et al. Mol Biol Rep, 2009 Sep. PMID 18989753
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Association analysis showed that different genotypes of LPIN2 were associated with back-fat thickness between the 6th and 7th ribs (P < 0.01).
    Title: Molecular characterization, chromosomal localization and association analysis with back-fat thickness of porcine LPIN2 and LPIN3.
Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidate phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to insulin stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fatty acid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in triglyceride biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
phosphatidate phosphatase LPIN3
NP_001135458.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001141986.1 → NP_001135458.1  phosphatidate phosphatase LPIN3

    See identical proteins and their annotated locations for NP_001135458.1

    Status: PROVISIONAL

    Source sequence(s)
    FJ377310
    UniProtKB/TrEMBL
    A0A8D1ARP8, B6VE06
    Related
    ENSSSCP00000077082.1, ENSSSCT00000096920.1
    Conserved Domains (3) summary
    pfam04571
    Location:1 → 106
    Lipin_N; lipin, N-terminal conserved region
    pfam08235
    Location:600 → 825
    LNS2; LNS2 (Lipin/Ned1/Smp2)
    pfam16876
    Location:448 → 536
    Lipin_mid; Lipin/Ned1/Smp2 multi-domain protein middle domain

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010459.5 Reference Sscrofa11.1 Primary Assembly

    Range
    43993710..44006188
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials