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LOC100170239 trehalose-6-phosphate synthase [ Zea mays ]

Gene ID: 100170239, updated on 14-Dec-2023

Summary

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Gene symbol
LOC100170239
Gene description
trehalose-6-phosphate synthase
Locus tag
ZEAMMB73_Zm00001d010755
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
GRMZM2G068943
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Genomic context

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See LOC100170239 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
18
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 8 NC_050103.1 (126767697..126776166)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 8 NC_024466.2 (126969678..126978025)

Chromosome 8 - NC_050103.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103635848 Neighboring gene uncharacterized LOC109941475 Neighboring gene putative nuclease HARBI1 Neighboring gene uncharacterized LOC103635851

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trehalose-6-phosphate synthase
Names
trehalose-6-phosphate synthase isform a
trehalose-6-phosphate synthase isform b
trehalose-6-phosphate synthase1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001130121.2 → NP_001123593.2  trehalose-6-phosphate synthase

    See identical proteins and their annotated locations for NP_001123593.2

    Status: PROVISIONAL

    Source sequence(s)
    EU659122
    UniProtKB/TrEMBL
    A0A1D6FTE8, B2ZG28
    Conserved Domains (3) summary
    cd03788
    Location:94 → 559
    GT1_TPS; Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a ...
    PLN03064
    Location:1 → 928
    PLN03064; alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
    pfam02358
    Location:594 → 834
    Trehalose_PPase; Trehalose-phosphatase

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050103.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    126767697..126776166
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035961257.1 → XP_035817150.1  trehalose-6-phosphate synthase isoform X2

    UniProtKB/TrEMBL
    A0A1D6FTE8, W0FKD9
    Conserved Domains (1) summary
    PLN03064
    Location:22 → 915
    PLN03064; alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional

  2. XM_008655989.2 → XP_008654211.1  trehalose-6-phosphate synthase isoform X1

    See identical proteins and their annotated locations for XP_008654211.1

    UniProtKB/TrEMBL
    A0A1D6FTE8, K7V516
    Conserved Domains (1) summary
    PLN03064
    Location:22 → 949
    PLN03064; alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional

  3. XM_008655988.3 → XP_008654210.1  trehalose-6-phosphate synthase isoform X1

    See identical proteins and their annotated locations for XP_008654210.1

    UniProtKB/TrEMBL
    A0A1D6FTE8, K7V516
    Conserved Domains (1) summary
    PLN03064
    Location:22 → 949
    PLN03064; alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Nucleotide Protein
Heading Accession and Version

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