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ALPL alkaline phosphatase, biomineralization associated [ Sus scrofa (pig) ]

Gene ID: 100170147, updated on 17-Aug-2024

Summary

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Official Symbol
ALPLprovided by VGNC
Official Full Name
alkaline phosphatase, biomineralization associatedprovided by VGNC
Primary source
VGNC:VGNC:85269
See related
Ensembl:ENSSSCG00000032607
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
ALP
Expression
Biased expression in kidney (RPKM 46.8), mixtures (RPKM 16.4) and 3 other tissues See more
Orthologs
human mouse all
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Genomic context

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See ALPL in Genome Data Viewer
Location:
chromosome: 6
Exon count:
15
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (79589695..79649646)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) Unplaced Scaffold NW_003538764.2 (18210..34501)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene endothelin converting enzyme 1 Neighboring gene uncharacterized LOC110261412 Neighboring gene RAP1 GTPase activating protein Neighboring gene ubiquitin specific peptidase 48

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alkaline phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alkaline phosphatase, tissue-nonspecific isozyme
Names
alkaline phosphatase, liver/bone/kidney

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    79589695..79649646
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021097682.1 → XP_020953341.1  alkaline phosphatase, tissue-nonspecific isozyme isoform X2

    UniProtKB/TrEMBL
    A0A287BR46, A0A480K8S1, A0A4X1W3F8, A0A8D0J1P2
    Conserved Domains (1) summary
    pfam00245
    Location:51 → 490
    Alk_phosphatase; Alkaline phosphatase

  2. XM_021097684.1 → XP_020953343.1  alkaline phosphatase, tissue-nonspecific isozyme isoform X2

    UniProtKB/TrEMBL
    A0A287BR46, A0A480K8S1, A0A4X1W3F8, A0A8D0J1P2
    Conserved Domains (1) summary
    pfam00245
    Location:51 → 490
    Alk_phosphatase; Alkaline phosphatase

  3. XM_021097683.1 → XP_020953342.1  alkaline phosphatase, tissue-nonspecific isozyme isoform X2

    UniProtKB/TrEMBL
    A0A287BR46, A0A480K8S1, A0A4X1W3F8, A0A8D0J1P2
    Related
    ENSSSCP00000058920.3, ENSSSCT00000059407.3
    Conserved Domains (1) summary
    pfam00245
    Location:51 → 490
    Alk_phosphatase; Alkaline phosphatase

  4. XM_021097685.1 → XP_020953344.1  alkaline phosphatase, tissue-nonspecific isozyme isoform X2

    UniProtKB/TrEMBL
    A0A287BR46, A0A480K8S1, A0A4X1W3F8, A0A8D0J1P2
    Conserved Domains (1) summary
    pfam00245
    Location:51 → 490
    Alk_phosphatase; Alkaline phosphatase

  5. XM_021097686.1 → XP_020953345.1  alkaline phosphatase, tissue-nonspecific isozyme isoform X2

    UniProtKB/TrEMBL
    A0A287BR46, A0A480K8S1, A0A4X1W3F8, A0A8D0J1P2
    Conserved Domains (1) summary
    pfam00245
    Location:51 → 490
    Alk_phosphatase; Alkaline phosphatase

  6. XM_021097681.1 → XP_020953340.1  alkaline phosphatase, tissue-nonspecific isozyme isoform X1

    UniProtKB/TrEMBL
    A0A480UBK2, A0A8D1WFA5
    Related
    ENSSSCP00000081321.1, ENSSSCT00000092095.1
    Conserved Domains (1) summary
    pfam00245
    Location:100 → 539
    Alk_phosphatase; Alkaline phosphatase
Nucleotide Protein
Heading Accession and Version

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