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CDS2 CDP-diacylglycerol synthase 2 [ Sus scrofa (pig) ]

Gene ID: 100170145, updated on 17-Aug-2024

Summary

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Official Symbol
CDS2provided by VGNC
Official Full Name
CDP-diacylglycerol synthase 2provided by VGNC
Primary source
VGNC:VGNC:95869
See related
Ensembl:ENSSSCG00000030123
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in subcutaneous adipose (RPKM 24.8), lung (RPKM 16.6) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See CDS2 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
14
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 17 NC_010459.5 (14151810..14220841)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 17 NC_010459.4 (15142037..15203537)

Chromosome 17 - NC_010459.5Genomic Context describing neighboring genes Neighboring gene transmembrane protein 230 Neighboring gene proliferating cell nuclear antigen Neighboring gene prokineticin receptor 2 Neighboring gene glycerophosphocholine phosphodiesterase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Characterization and physical mapping of the porcine CDS1 and CDS2 genes. Mercadé A, et al. Anim Biotechnol, 2007. PMID 17364441
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidate cytidylyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidate cytidylyltransferase 2
NP_001160145.1
XP_020932904.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001166673.1 → NP_001160145.1  phosphatidate cytidylyltransferase 2

    See identical proteins and their annotated locations for NP_001160145.1

    Status: PROVISIONAL

    Source sequence(s)
    AB529451
    UniProtKB/TrEMBL
    A0A4X1UHZ2, A0A8D2C799, D0G6R8
    Related
    ENSSSCP00000032506.1, ENSSSCT00000045551.3
    Conserved Domains (2) summary
    pfam04718
    Location:38 → 87
    ATP-synt_G; Mitochondrial ATP synthase g subunit
    cl21502
    Location:106 → 425
    CTP_transf_1; Cytidylyltransferase family

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010459.5 Reference Sscrofa11.1 Primary Assembly

    Range
    14151810..14220841
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021077245.1 → XP_020932904.1  phosphatidate cytidylyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A8D1N4U4
    Related
    ENSSSCP00000081129.1, ENSSSCT00000097658.1
    Conserved Domains (1) summary
    cl21502
    Location:99 → 418
    CTP_transf_1; Cytidylyltransferase family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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