CD209 CD209 molecule [Sus scrofa (pig)] - Gene

Summary

Gene symbol: CD209
Gene description: CD209 molecule
See related: Ensembl:ENSSSCG00000013579
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Sus scrofa
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as: DC-SIGN
Expression: Biased expression in subcutaneous adipose (RPKM 200.9), longissimus dorsi muscle (RPKM 12.8) and 1 other tissue See more
Orthologs: human all
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Genomic context

Location:: chromosome: 2

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
106	current	Sscrofa11.1 (GCF_000003025.6)	2	NC_010444.4 (71394414..71397711)
105	previous assembly	Sscrofa10.2 (GCF_000003025.5)	2	NC_010444.3 (71928204..71931502)

Chromosome 2 - NC_010444.4 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
BioProject: PRJNA311523
Publication: PMID 27646534
Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

The cloning and characterization of the cDNA and gene encoding porcine DC-SIGN (pDC-SIGN)is reported. The results will help better understand the biological role(s) of DC-SIGN family in innate immunity during the evolutionary process.
Title: Porcine DC-SIGN: molecular cloning, gene structure, tissue distribution and binding characteristics.

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General gene information

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General protein information

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Preferred Names: CD209 antigen

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001129972.1 → NP_001123444.1 CD209 antigen

See identical proteins and their annotated locations for NP_001123444.1

Status: PROVISIONAL

Source sequence(s)

EU442799

UniProtKB/TrEMBL

A0A4X1VIP6, A0A8D1U5U9, B3FVQ2, F1SCH8

Related

ENSSSCP00000014430.2, ENSSSCT00000014831.6

Conserved Domains (1) summary

cd03590
Location:112 → 232

CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)