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zf(c2h2)-86 zinc finger (C2H2)-86 [ Ciona intestinalis (vase tunicate) ]

Gene ID: 100170086, updated on 21-Dec-2023

Summary

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Gene symbol
zf(c2h2)-86
Gene description
zinc finger (C2H2)-86
See related
Ensembl:ENSCING00000012768
Gene type
protein coding
RefSeq status
MODEL
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
Also known as
Ci-ZF(C2H2)-86
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Genomic context

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See zf(c2h2)-86 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) 1 NC_020166.2 (5674708..5697260)

Chromosome 1 - NC_020166.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100181193 Neighboring gene small nucleolar RNA U3 Neighboring gene uncharacterized LOC100186681 Neighboring gene RNA 3'-terminal phosphate cyclase-like Neighboring gene uncharacterized LOC104265342 Neighboring gene uncharacterized LOC113474251 Neighboring gene ras-related GTP-binding protein A-like Neighboring gene cytochrome P450 3A25-like Neighboring gene phosphomevalonate kinase-like Neighboring gene DNA-directed RNA polymerase III subunit RPC8-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_020166.2 Chromosome 1 Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA cis splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
spliceosome-associated protein CWC15 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NC_020166.2 Reference KH Primary Assembly

    Range
    5674708..5697260
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002128093.4 → XP_002128129.1  spliceosome-associated protein CWC15 homolog

    UniProtKB/TrEMBL
    A0A1W2WBL2, F6ZQ39
    Related
    ENSCINP00000023698
    Conserved Domains (1) summary
    pfam04889
    Location:1 → 216
    Cwf_Cwc_15; Cwf15/Cwc15 cell cycle control protein

RNA

  1. XR_003396011.1 RNA Sequence

  2. XR_003396010.1 RNA Sequence

  3. XR_003396012.1 RNA Sequence

  4. XR_003396013.1 RNA Sequence

  5. XR_003396008.1 RNA Sequence

  6. XR_003396009.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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