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Chpf Chondroitin polymerizing factor [ Acyrthosiphon pisum (pea aphid) ]

Gene ID: 100166045, updated on 23-May-2024

Summary

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Gene symbol
Chpf
Gene description
Chondroitin polymerizing factor
See related
APHIDBASE:ACYPI006949; EnsemblRapid:LOC100166045
Gene type
protein coding
RefSeq status
MODEL
Organism
Acyrthosiphon pisum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha; Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon
Orthologs
fruit fly all
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Genomic context

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See Chpf in Genome Data Viewer
Location:
chromosome: A2
Exon count:
10
Annotation release Status Assembly Chr Location
103 current pea_aphid_22Mar2018_4r6ur (GCF_005508785.1) A2 NC_042495.1 (45000346..45006457, complement)
102 previous assembly Acyr_2.0 (GCF_000142985.2) Unplaced Scaffold NW_003383876.1 (238455..244095)

Chromosome A2 - NC_042495.1Genomic Context describing neighboring genes Neighboring gene 52 kDa repressor of the inhibitor of the protein kinase-like Neighboring gene ribonuclease H1-like Neighboring gene delta-9 desaturase-like Neighboring gene polycomb group protein Psc Neighboring gene cuticle protein 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate synthase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Acyrthosiphon pisum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference pea_aphid_22Mar2018_4r6ur Primary Assembly

Genomic

  1. NC_042495.1 Reference pea_aphid_22Mar2018_4r6ur Primary Assembly

    Range
    45000346..45006457 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029490110.1 → XP_029345970.1  chondroitin sulfate synthase 2

    UniProtKB/TrEMBL
    A0A8R2JTP1
    Related
    XP_029345970.1, XM_029490110.1
    Conserved Domains (2) summary
    pfam05679
    Location:231 → 768
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:173 → 259
    Galactosyl_T; Galactosyltransferase

  2. XM_001946163.5 → XP_001946198.1  chondroitin sulfate synthase 2

    See identical proteins and their annotated locations for XP_001946198.1

    UniProtKB/TrEMBL
    A0A8R2JTP1
    Related
    XP_001946198.1, XM_001946163.5
    Conserved Domains (2) summary
    pfam05679
    Location:231 → 768
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:173 → 259
    Galactosyl_T; Galactosyltransferase

  3. XM_029490109.1 → XP_029345969.1  chondroitin sulfate synthase 2

    UniProtKB/TrEMBL
    A0A8R2JTP1
    Related
    XP_029345969.1, XM_029490109.1
    Conserved Domains (2) summary
    pfam05679
    Location:231 → 768
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:173 → 259
    Galactosyl_T; Galactosyltransferase

  4. XM_016805258.2 → XP_016660747.1  chondroitin sulfate synthase 2

    UniProtKB/TrEMBL
    A0A8R2JTP1
    Related
    XP_016660747.1, XM_016805258.2
    Conserved Domains (2) summary
    pfam05679
    Location:231 → 768
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:173 → 259
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein Strain
Heading Accession and Version

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