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LOC100165812 dnaJ homolog subfamily B member 6-like [ Acyrthosiphon pisum (pea aphid) ]

Gene ID: 100165812, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100165812
Gene description
dnaJ homolog subfamily B member 6-like
See related
APHIDBASE:ACYPI006735; EnsemblRapid:LOC100165812
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Acyrthosiphon pisum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha; Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon
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Genomic context

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See LOC100165812 in Genome Data Viewer
Location:
chromosome: A2
Exon count:
7
Annotation release Status Assembly Chr Location
103 current pea_aphid_22Mar2018_4r6ur (GCF_005508785.1) A2 NC_042495.1 (6793564..6808304)
102 previous assembly Acyr_2.0 (GCF_000142985.2) Unplaced Scaffold NW_003383524.1 (1595005..1609750)

Chromosome A2 - NC_042495.1Genomic Context describing neighboring genes Neighboring gene ethanolamine-phosphate cytidylyltransferase Neighboring gene microsomal glutathione S-transferase 1-like Neighboring gene uncharacterized LOC100164471 Neighboring gene ubiquitin carboxyl-terminal hydrolase 20 Neighboring gene death-associated protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Hsp70 protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chaperone-mediated protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dnaJ homolog subfamily B member 6-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001162746.2 → NP_001156218.1  dnaJ homolog subfamily B member 6-like

    See identical proteins and their annotated locations for NP_001156218.1

    Status: PROVISIONAL

    Source sequence(s)
    AK342991
    UniProtKB/TrEMBL
    C4WY29
    Related
    NP_001156218.1, NM_001162746.2
    Conserved Domains (1) summary
    pfam00226
    Location:4 → 67
    DnaJ; DnaJ domain

RefSeqs of Annotated Genomes: Acyrthosiphon pisum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference pea_aphid_22Mar2018_4r6ur Primary Assembly

Genomic

  1. NC_042495.1 Reference pea_aphid_22Mar2018_4r6ur Primary Assembly

    Range
    6793564..6808304
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008191966.3 → XP_008190188.1  dnaJ homolog subfamily B member 6-like isoform X1

    UniProtKB/TrEMBL
    A0A8R2FFL2
    Related
    XP_008190188.1, XM_008191966.3
    Conserved Domains (1) summary
    pfam00226
    Location:4 → 67
    DnaJ; DnaJ domain
Nucleotide Protein
Heading Accession and Version

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