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Tmtc3 Transmembrane O-mannosyltransferase targeting cadherins 3 [ Acyrthosiphon pisum (pea aphid) ]

Gene ID: 100164732, updated on 15-May-2024

Summary

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Gene symbol
Tmtc3
Gene description
Transmembrane O-mannosyltransferase targeting cadherins 3
See related
APHIDBASE:ACYPI005722; EnsemblRapid:LOC100164732
Gene type
protein coding
RefSeq status
MODEL
Organism
Acyrthosiphon pisum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha; Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon
Orthologs
fruit fly all
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Genomic context

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See Tmtc3 in Genome Data Viewer
Location:
chromosome: A2
Exon count:
16
Annotation release Status Assembly Chr Location
103 current pea_aphid_22Mar2018_4r6ur (GCF_005508785.1) A2 NC_042495.1 (31628847..31692305)
102 previous assembly Acyr_2.0 (GCF_000142985.2) Unplaced Scaffold NW_003383502.1 (610096..674000, complement)

Chromosome A2 - NC_042495.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115034139 Neighboring gene tetraspanin-2A Neighboring gene uncharacterized LOC100569363 Neighboring gene uncharacterized LOC115034337 Neighboring gene uncharacterized LOC100571759 Neighboring gene replication protein A 70 kDa DNA-binding subunit-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC3
Names
transmembrane and TPR repeat-containing protein CG4050

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Acyrthosiphon pisum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference pea_aphid_22Mar2018_4r6ur Primary Assembly

Genomic

  1. NC_042495.1 Reference pea_aphid_22Mar2018_4r6ur Primary Assembly

    Range
    31628847..31692305
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001947305.5 → XP_001947340.2  protein O-mannosyl-transferase TMTC3

    UniProtKB/TrEMBL
    A0A8R1W0M7
    Related
    XP_001947340.2, XM_001947305.5
    Conserved Domains (3) summary
    TIGR02917
    Location:448 → 818
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:591 → 618
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:285 → 358
    DUF1736; Domain of unknown function (DUF1736)
Nucleotide Protein Strain
Heading Accession and Version

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