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rt Protein O-mannosyltransferase rt [ Acyrthosiphon pisum (pea aphid) ]

Gene ID: 100164627, updated on 22-May-2024

Summary

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Gene symbol
rt
Gene description
Protein O-mannosyltransferase rt
See related
APHIDBASE:ACYPI005621; EnsemblRapid:LOC100164627
Gene type
protein coding
RefSeq status
MODEL
Organism
Acyrthosiphon pisum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha; Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon
Orthologs
fruit fly all
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Genomic context

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Location:
chromosome: X
Exon count:
14
Annotation release Status Assembly Chr Location
103 current pea_aphid_22Mar2018_4r6ur (GCF_005508785.1) X NC_042493.1 (34722818..34728144)
102 previous assembly Acyr_2.0 (GCF_000142985.2) Unplaced Scaffold NW_003383750.1 (136599..141917)

Chromosome X - NC_042493.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase SIK3 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class Q Neighboring gene cellular tumor antigen p53 Neighboring gene uncharacterized LOC103309313

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dolichyl-phosphate-mannose-protein mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Acyrthosiphon pisum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference pea_aphid_22Mar2018_4r6ur Primary Assembly

Genomic

  1. NC_042493.1 Reference pea_aphid_22Mar2018_4r6ur Primary Assembly

    Range
    34722818..34728144
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001949686.5 → XP_001949721.2  protein O-mannosyltransferase 1

    UniProtKB/TrEMBL
    A0A8R2A4D0
    Related
    XP_001949721.2, XM_001949686.5
    Conserved Domains (1) summary
    COG1928
    Location:64 → 788
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials